PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2417_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 221aa    MW: 24619.5 Da    PI: 10.2365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2417_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.4e-21128177255
                                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  cra_locus_2417_iso_3_len_663_ver_3 128 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 177
                                         59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-33127187No hitNo description
SMARTSM003807.5E-38128191IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-23128186IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-32128186IPR001471AP2/ERF domain
PROSITE profilePS5103223.143128185IPR001471AP2/ERF domain
PfamPF008471.7E-14129177IPR001471AP2/ERF domain
PRINTSPR003671.6E-11129140IPR001471AP2/ERF domain
PRINTSPR003671.6E-11151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
ITSRTFFSFS AAPSTSSAST SFPYNSSFYS SVQSQPNTYP DGIASFHHQA LSGMDQSGSV  60
GLNHLNSSQI HDIQAQINLQ NLTQQHMLSG PFHGQWANNH QNQAAHNFLA PRPVTMKQSG  120
SPPKPTKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEEAALAYDK AAYKLRGDFA  180
RLNFPHLRHN GSLIGGDFGE YKPLHSSVDA KLQAICQRLA E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21127185160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615540.11e-89PREDICTED: ethylene-responsive transcription factor RAP2-4-like
RefseqXP_016500912.11e-89PREDICTED: ethylene-responsive transcription factor RAP2-4-like isoform X1
RefseqXP_016500913.11e-89PREDICTED: ethylene-responsive transcription factor RAP2-4-like isoform X2
SwissprotQ8H1E46e-75RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A068TXJ11e-100A0A068TXJ1_COFCA; Uncharacterized protein
STRINGVIT_18s0001g05250.t013e-79(Vitis vinifera)